GitHub - nanoporetech/fast5mod: Extract modifed base call
Other choices are dcm for which the motifs CCAGG and CCTGG are examined for 5mC and dam (GATC) for 6mA. The output file is a simple tab-delimited text file with columns: '', 'position', 'motif', '', '', '', and ''. Here fwd./ref. indicate counts on the two DNA strands and meth./canon. indicate counts for methylated and canonical